Main Page

Welcome to !
This wiki site is for sharing knowledge on electron microscopy.

New pages can be easily created by searching the term in the search box (look upper-right), then click on the link in red.

Booking the L120C at MSB
https://utorontomil.bookmylab.com/index.php

All pages in this wiki
https://emtoronto.miraheze.org/wiki/Special:AllPages

Links to frequently used software
Packages:
 * EMAN2
 * RELION
 * cryoSPARC
 * cisTEM
 * Frealign
 * 
 * CCPEM

Task-specific:
 * Unblur
 * Motioncor2


 * CTFFIND
 * GCTF


 * Gautomatch


 * IMAGEJ: tool for displaying and converting image files.
 * pyEM: python tools by Eugene Palovcak and Daniel Asarnow at UCSF.

A more complete list of software at EMDB:
 * http://www.emdatabank.org/emsoftware.html

Forums

 * CCPEM: Mailing list. General EM discussions, job listings, seminar announcements. Use for Relion-specific questions.
 * 3D-EM: Mailing list. General EM discussions, job listings, seminar announcements.
 * EMAN2 Google Group. Post EMAN2-specific questions here.
 * CryoSPARC forum. Post cryoSPARC-specific questions here.

Educational resources

 * EM-learning.com
 * cryoem principles @yale
 * MRC cryo-EM course
 * CTF explorer: CTF curve simulations
 * John Rodenburg's EM tutorials
 * A ray-trace simulator
 * 3D EM methods wiki

Manuals found on Internet

 * Talos12 Alignments


 * Talos12 user interface


 * Talos12 Options


 * TIA


 * Tecnai12-30 Modes